PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8682
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 378aa    MW: 41483 Da    PI: 4.9029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8682genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039124145223
                               EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                               +Cp C++ F ++     H+r+H
  Tp57577_TGAC_v2_mRNA8682 124 TCPECKREFASWRAAFGHMRKH 145
                               6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDKNVSNNSA TTNNNPSPPN TPPHTPNETN PNIEGLETIA KTSEEVLAEL NIVSDEEISN  60
ENGDGGANED GGAEGVVPRV MVCALTANVS NTSVVEQVGG DGHVQPFKKR KYNSIRDPPA  120
GKPTCPECKR EFASWRAAFG HMRKHPERPH RGFFPPPTFT PTAPVAGIRV AEDDGRPKKV  180
DDRMLTRVRE LVIDLNRSIG VSAESSGAGG SGGRGRDEEA PVPTHENEEG SRKNVFDLNE  240
LPPILVIVER DSQEPLGDDV SIQQADNIIF LDVVGGVDKK ERIYGLDPEA ERYKRSRSST  300
YDGISSSEYQ HMRTIISDLS TENMTLKEKL KTHEELIHQS QEDSRLLREQ LFQFMEKFSL  360
SHLPPRSDPP PSPPPTA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612333.12e-56hypothetical protein MTR_5g023910
TrEMBLG7K0242e-56G7K024_MEDTR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.11e-08C2H2 family protein